
The quest for effective Alzheimer's treatments has traditionally focused on targeting amyloid plaques, tau tangles, and neuronal dysfunction. However, new research is now shifting attention to a previously overlooked component: the blood-brain barrier (BBB). This critical protective layer may hold the key to understanding and treating neurodegenerative diseases in ways we never imagined.
Recent discoveries suggest that BBB dysfunction isn't merely a consequence of Alzheimer's disease—it may be one of the factors that contribute to its development. This paradigm shift opens exciting new potential avenues for therapeutic interventions.
What Is the Blood-Brain Barrier?
The blood-brain barrier serves as a sophisticated gatekeeper for our most vital organ. This specialized membrane consists of endothelial cells with tight junctions, pericytes, microglia, and astrocytic endfeet, working together to:
Shield the brain from toxins, harmful cells, and microorganisms
Supply essential nutrients and regulatory molecules
Remove metabolic waste products
Maintain the delicate homeostasis necessary for optimal brain function
When this barrier becomes compromised, the consequences can be devastating for brain health. Toxins and microorganisms may enter, waste removal becomes inefficient, and the entire neurological system faces increasing stress.
A Breakthrough Discovery: Endothelial TDP-43 Depletion
On March 14, 2025, researchers at UConn School of Medicine published a landmark study in Nature Neuroscience that could drastically change our understanding of neurodegenerative diseases.
The research team, led by Omar Moustafa Fathy and Dr. Patrick Murphy, uncovered a critical new mechanism in neurodegeneration involving endothelial cells in the blood-brain barrier.
Their discovery revealed that endothelial cells—the inner lining of blood vessels that form the primary component of the BBB—show depletion of TDP-43, an RNA-binding protein genetically linked to ALS-FTD and commonly disrupted in Alzheimer's disease.
What makes this finding particularly significant is that it marks the first time researchers have identified shared endothelial cell dysfunction across three different neurodegenerative diseases: Alzheimer's disease, ALS, and frontotemporal dementia. This suggests a common vascular pathway may be an important factor in various forms of neurodegeneration.
Innovative Research Methods

The UConn team overcame a significant challenge in their research: endothelial cells are rare and difficult to isolate, especially from brain tissue. To address this, they developed a new approach to enrich these cells from frozen tissues stored in a large NIH-sponsored biobank.
They then applied inCITE-seq—a method for measuring protein-level signaling responses in single cells—marking its first-ever use in human tissues. This methodological breakthrough enabled them to discover that endothelial cells from different neurodegenerative diseases shared fundamental similarities that distinguished them from healthy aging endothelium.
A New Gateway to Understanding Neurodegeneration
For years, research has primarily focused on neurons as the central players in neurodegenerative diseases. This new research shifts that focus, drawing attention to the pathway into the brain’s interstitial space and revealing how blood-brain barrier (BBB) dysfunction contributes to neurodegeneration.
It's a shift that could change everything. As Dr. Murphy noted, "It is often said in the field that 'we are only as old as our arteries.' Across diseases, we are learning the importance of the endothelium. I had no doubt the same would be true in neurodegeneration, but seeing what these cells were doing was a critical first step."
This vascular perspective aligns with growing evidence that BBB dysfunction occurs early in the pathogenesis of Alzheimer's disease and correlates with cognitive decline. When the BBB is compromised, it disrupts the tightly regulated transfer and clearance of vital molecules and metabolic by-products, potentially contributing to:
Decreased amyloid-β clearance
Increased amyloid-β and tau aggregation
Activation of microglia
Astrocyte reactivity
Pericyte shedding
Each of these factors further destabilizes the BBB, creating a destructive cycle that accelerates neurodegeneration.
BBB as a Therapeutic Target

A March 21, 2025 publication in PubMed highlights the potential of targeting the BBB for therapeutic intervention in neurodegenerative disorders. The authors argue that BBB breakdown and dysfunction can significantly affect neuronal and synaptic function and the neurodegenerative process itself.
This represents a fundamental shift in treatment approach. Rather than focusing exclusively on clearing amyloid plaques or preventing tau tangles, researchers are now exploring ways to:
Protect and restore altered BBB functions
Improve drug delivery across the BBB
Develop cell and gene therapies targeting BBB components
Utilize small molecules to enhance BBB integrity
These approaches could potentially preserve or restore BBB functions, addressing a root cause of neurodegeneration rather than merely treating symptoms.
The Role of Cerebrospinal Fluid and the Glymphatic System
The blood-brain barrier's function is intimately connected with cerebrospinal fluid (CSF) circulation and the glymphatic system—the brain's waste clearance pathway. CSF plays a critical yet often overlooked role in maintaining brain health by:
Providing essential cushioning and protection
Delivering nutrients
Clearing away waste
Supporting the brain's detoxification system
Recent research has shown that disruptions in CSF flow and glymphatic function can contribute to the accumulation of toxic proteins linked to Alzheimer's disease. This connection between vascular health, CSF dynamics, and brain detoxification represents a promising area for therapeutic intervention.
Inflammation and BBB Dysfunction
Studies in animal models of Alzheimer's disease show that systemic inflammation can cause BBB damage and amyloidosis, increasing memory impairments. A March 4, 2025 study in Nature examined how repeated Streptococcus pneumoniae lung infection affects the BBB in a rat model of Alzheimer's disease.
The researchers found that infection led to higher BBB water exchange rates, which correlated with increased expression of aquaporin-4 (AQP4) water channel proteins in the hippocampus. These water channels, located on astrocytic endfeet, play a crucial role in regulating fluid movement between blood vessels and brain tissue.
This finding highlights the complex interplay between peripheral inflammation, BBB function, and neurodegeneration. It suggests that addressing systemic inflammation and supporting BBB integrity could be valuable approaches in Alzheimer's treatment.
Conclusion: A New Frontier in Alzheimer's Treatment
The discovery of endothelial TDP-43 depletion and the growing recognition of the blood-brain barrier's role in neurodegeneration mark the beginning of an exciting new chapter in Alzheimer's research. By shifting focus from neurons to the vascular system, scientists are uncovering new mechanisms and potential treatment targets that could fundamentally change how we approach neurodegenerative diseases.
This vascular revolution in neurodegeneration research offers hope for more effective treatments that address the root causes of Alzheimer's disease rather than merely managing symptoms. By restoring BBB integrity, enhancing cerebrospinal fluid flow, and optimizing the glymphatic system, we may be able to use the brain's natural healing mechanisms to combat neurodegeneration.
As research in this area continues to advance, we move closer to a future where Alzheimer's disease is no longer a devastating diagnosis but a condition that can be effectively treated, managed, and perhaps even prevented through innovative approaches.
To learn more about Ciatrix’s research and our upcoming clinical trials launching in June, click here. These Phase II and III studies will explore how enhancing cerebrospinal fluid circulation may impact cognitive function in Alzheimer’s patients. Join us on a new, non-invasive path to better brain health!
References
Fathy, O. M., Murphy, P. A., & et al. (2025). Endothelial TDP-43 depletion disrupts core blood-brain barrier pathways in neurodegeneration. Nature Neuroscience. Published March 14, 2025. https://www.nature.com/articles/s41593-025-01914-5
Mairal, A., & et al. (2021). Joint single-cell measurements of nuclear proteins and RNA in vivo. Nature Methods. https://www.nature.com/articles/s41592-021-01278-1
Montagne, A., Nation, D. A., & et al. (2021). Strategies for delivering therapeutics across the blood–brain barrier. Nature Reviews Drug Discovery. https://www.nature.com/articles/s41573-021-00139-y
Rasmussen, M. K., Mestre, H., & Nedergaard, M. (2020). The impact of neurovascular, blood-brain barrier, and glymphatic dysfunction in neurodegenerative and metabolic diseases. Neurobiology of Disease. https://www.sciencedirect.com/science/article/abs/pii/S0074774220300155
Smith, J. P., & et al. (2025). MRI detects blood-brain barrier alterations in a rat model of Alzheimer’s disease and lung infection. npj Imaging. Published March 4, 2025. https://www.nature.com/articles/s44303-025-00071-5
Rust, R., Sagare, A. P., Zhang, M., Zlokovic, B. V., & Kisler, K. (2025). The blood-brain barrier as a treatment target for neurodegenerative disorders. Expert Opinion on Drug Delivery. Published March 21, 2025. https://pubmed.ncbi.nlm.nih.gov/40096820/
University of Connecticut. (2025). New clue on what is leading to neurodegenerative diseases like Alzheimer’s and ALS. ScienceDaily. Published March 14, 2025. https://www.sciencedaily.com/releases/2025/03/250314170606.htm